add pluto notebook server
Pluto [1] is one of these interactive notebook thingies that have become so unreasonably popular with people doing machine learning or data analysis, but – somewhat surprisingly – it's actually not shit (e.g. no global mutable state in the notebook, no weird unreadable fileformat that doesn't play well with version control, etc.) In particular, it can be used collaboratively (while it doesn't do real-time collaborative editing like a pad, it /does/ push out global updates each time someone executes a cell, so it's reasonably close), and I think it may be useful to have for julia-hacking sessions. It may also be useful for people running low-end laptops, since code is executed on the host — and I guess hainich has enough unused ressources lying around that we can spare a few. After deploying this, the notebook server should be reachable via: ssh hainich -L 9999:localhost:9999 and then visiting http://localhost:9999 Caveats: by design, pluto allows a user to execute arbitrary code on the host. That is its main function, and not something we can prevent. I've tried to mitigate this as far as possible by: - only allowing access via ssh port forwarding. In theory pluto does have basic access control, but that works via a secret link that it'll spit to stdout on startup (i.e. the journal), which cannot be set in advance, nor regenerted without restarting the entire process. Unfortunately, this means we won't be able to use it at e.g. conference sessions with people who don't have access to our infra - running it in a nixos-container as its own user, so it should never get any kind of access to the "main" directory tree apart from a single directory that we can keep notebooks in (which is currently a bind mount set to /data/pluto) - limiting memory and cpu for that container via systemd (less out of worry for exploits, and more so that a few accidental while-true loops will never consume enough cpu time to noticebly slow down anything else). The current limits for both a chosen relatively low; we'll have to see if they become too limiting should anyone run an actual weather model on this. Things we could also do: - currently, the container does not have its own network (mostly since that would make it slightly less convenient to use with port forwarding); in theory, pluto should even be able to run entirely without internet access of its own, but I'm not sure if this would break things like loading images / raw data into a notebook - make the container ephemeral, and only keep the directory containing the notebooks. I haven't done this since it would require recompilation of pluto each time the container is wiped, which makes for a potentially inconvenient startup time (though still < 3-5 mins) Questions: - have I missed anything important that should definitely be also sandboxed / limited in some way? - in general, are we comfortable running something like this? - would we (in principle) be comfortable opening this up to other people for congress sessions (assuming we figure out a reasonable access control)? Notes to deployer: - while I have not tested this on hainich, it works on my own server - you will probably have to create the /data/pluto directory for the bind mount, and make it world-writable (or chown it to the pluto user inside the container) [1] https://github.com/fonsp/Pluto.jl/
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@ -21,6 +21,7 @@
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../../services/gitlab-runner.nix
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../../services/unifi.nix
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../../services/lantifa.nix
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../../services/pluto.nix
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./lxc.nix
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];
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|
|
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199
pkgs/pluto/Manifest.toml
Normal file
199
pkgs/pluto/Manifest.toml
Normal file
|
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@ -0,0 +1,199 @@
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# This file is machine-generated - editing it directly is not advised
|
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|
||||
[[Artifacts]]
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||||
deps = ["Pkg"]
|
||||
git-tree-sha1 = "c30985d8821e0cd73870b17b0ed0ce6dc44cb744"
|
||||
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
|
||||
version = "1.3.0"
|
||||
|
||||
[[Base64]]
|
||||
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
|
||||
|
||||
[[Configurations]]
|
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deps = ["Crayons", "ExproniconLite", "OrderedCollections", "TOML"]
|
||||
git-tree-sha1 = "b8486a417456d2fbbe2af13e24cef459c9f42429"
|
||||
uuid = "5218b696-f38b-4ac9-8b61-a12ec717816d"
|
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version = "0.15.4"
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||||
|
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[[Crayons]]
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git-tree-sha1 = "3f71217b538d7aaee0b69ab47d9b7724ca8afa0d"
|
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uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
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version = "4.0.4"
|
||||
|
||||
[[DataAPI]]
|
||||
git-tree-sha1 = "dfb3b7e89e395be1e25c2ad6d7690dc29cc53b1d"
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uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
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version = "1.6.0"
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||||
|
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[[DataValueInterfaces]]
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git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
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uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464"
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version = "1.0.0"
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||||
|
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[[Dates]]
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deps = ["Printf"]
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uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
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|
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[[Distributed]]
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deps = ["Random", "Serialization", "Sockets"]
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uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
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|
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[[ExproniconLite]]
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git-tree-sha1 = "c97ce5069033ac15093dc44222e3ecb0d3af8966"
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uuid = "55351af7-c7e9-48d6-89ff-24e801d99491"
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version = "0.6.9"
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[[FuzzyCompletions]]
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deps = ["REPL"]
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git-tree-sha1 = "9cde086faa37f32794be3d2df393ff064d43cd66"
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uuid = "fb4132e2-a121-4a70-b8a1-d5b831dcdcc2"
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version = "0.4.1"
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[[HTTP]]
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deps = ["Base64", "Dates", "IniFile", "MbedTLS", "NetworkOptions", "Sockets", "URIs"]
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git-tree-sha1 = "b855bf8247d6e946c75bb30f593bfe7fe591058d"
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uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
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version = "0.9.8"
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[[IniFile]]
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deps = ["Test"]
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git-tree-sha1 = "098e4d2c533924c921f9f9847274f2ad89e018b8"
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uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f"
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version = "0.5.0"
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[[InteractiveUtils]]
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deps = ["Markdown"]
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uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
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[[IteratorInterfaceExtensions]]
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git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
|
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uuid = "82899510-4779-5014-852e-03e436cf321d"
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version = "1.0.0"
|
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|
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[[JLLWrappers]]
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deps = ["Preferences"]
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git-tree-sha1 = "642a199af8b68253517b80bd3bfd17eb4e84df6e"
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uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
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version = "1.3.0"
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[[LibGit2]]
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deps = ["Printf"]
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uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
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|
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[[Libdl]]
|
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uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
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|
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[[LinearAlgebra]]
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deps = ["Libdl"]
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uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
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|
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[[Logging]]
|
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uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
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||||
|
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[[Markdown]]
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deps = ["Base64"]
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uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
|
||||
|
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[[MbedTLS]]
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deps = ["Dates", "MbedTLS_jll", "Random", "Sockets"]
|
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git-tree-sha1 = "1c38e51c3d08ef2278062ebceade0e46cefc96fe"
|
||||
uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
|
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version = "1.0.3"
|
||||
|
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[[MbedTLS_jll]]
|
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
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git-tree-sha1 = "0eef589dd1c26a3ac9d753fe1a8bcad63f956fa6"
|
||||
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
|
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version = "2.16.8+1"
|
||||
|
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[[MsgPack]]
|
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deps = ["Serialization"]
|
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git-tree-sha1 = "a8cbf066b54d793b9a48c5daa5d586cf2b5bd43d"
|
||||
uuid = "99f44e22-a591-53d1-9472-aa23ef4bd671"
|
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version = "1.1.0"
|
||||
|
||||
[[NetworkOptions]]
|
||||
git-tree-sha1 = "ed3157f48a05543cce9b241e1f2815f7e843d96e"
|
||||
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
|
||||
version = "1.2.0"
|
||||
|
||||
[[OrderedCollections]]
|
||||
git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c"
|
||||
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
|
||||
version = "1.4.1"
|
||||
|
||||
[[Pkg]]
|
||||
deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
|
||||
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
|
||||
|
||||
[[Pluto]]
|
||||
deps = ["Base64", "Configurations", "Dates", "Distributed", "FuzzyCompletions", "HTTP", "InteractiveUtils", "Logging", "Markdown", "MsgPack", "Pkg", "REPL", "Sockets", "TableIOInterface", "Tables", "UUIDs"]
|
||||
git-tree-sha1 = "85156b21dee3a4515ff479555eb958ad33c057aa"
|
||||
uuid = "c3e4b0f8-55cb-11ea-2926-15256bba5781"
|
||||
version = "0.14.5"
|
||||
|
||||
[[Preferences]]
|
||||
deps = ["TOML"]
|
||||
git-tree-sha1 = "00cfd92944ca9c760982747e9a1d0d5d86ab1e5a"
|
||||
uuid = "21216c6a-2e73-6563-6e65-726566657250"
|
||||
version = "1.2.2"
|
||||
|
||||
[[Printf]]
|
||||
deps = ["Unicode"]
|
||||
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
|
||||
|
||||
[[REPL]]
|
||||
deps = ["InteractiveUtils", "Markdown", "Sockets"]
|
||||
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
|
||||
|
||||
[[Random]]
|
||||
deps = ["Serialization"]
|
||||
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
|
||||
|
||||
[[SHA]]
|
||||
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
|
||||
|
||||
[[Serialization]]
|
||||
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
|
||||
|
||||
[[Sockets]]
|
||||
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
|
||||
|
||||
[[TOML]]
|
||||
deps = ["Dates"]
|
||||
git-tree-sha1 = "44aaac2d2aec4a850302f9aa69127c74f0c3787e"
|
||||
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
|
||||
version = "1.0.3"
|
||||
|
||||
[[TableIOInterface]]
|
||||
git-tree-sha1 = "9a0d3ab8afd14f33a35af7391491ff3104401a35"
|
||||
uuid = "d1efa939-5518-4425-949f-ab857e148477"
|
||||
version = "0.1.6"
|
||||
|
||||
[[TableTraits]]
|
||||
deps = ["IteratorInterfaceExtensions"]
|
||||
git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
|
||||
uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
|
||||
version = "1.0.1"
|
||||
|
||||
[[Tables]]
|
||||
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
|
||||
git-tree-sha1 = "c9d2d262e9a327be1f35844df25fe4561d258dc9"
|
||||
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
|
||||
version = "1.4.2"
|
||||
|
||||
[[Test]]
|
||||
deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
|
||||
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
|
||||
|
||||
[[URIs]]
|
||||
git-tree-sha1 = "97bbe755a53fe859669cd907f2d96aee8d2c1355"
|
||||
uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
|
||||
version = "1.3.0"
|
||||
|
||||
[[UUIDs]]
|
||||
deps = ["Random", "SHA"]
|
||||
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
|
||||
|
||||
[[Unicode]]
|
||||
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
|
||||
2
pkgs/pluto/Project.toml
Normal file
2
pkgs/pluto/Project.toml
Normal file
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@ -0,0 +1,2 @@
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[deps]
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Pluto = "c3e4b0f8-55cb-11ea-2926-15256bba5781"
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50
pkgs/pluto/Readme.org
Normal file
50
pkgs/pluto/Readme.org
Normal file
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@ -0,0 +1,50 @@
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#+TITLE: Pluto standalone
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This is a nix derivation that wraps a version of julia with the packages
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(and their dependency closure) defined in ~Packages.toml~; currently
|
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this is just Pluto. It also provides a little julia script that will
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activate this packageset (called a "julia depot"), and then start a
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Pluto notebook server on port 9999. Note that it does so without setting
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up any kind of authenticaton, so don't expose that port!
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* TODOs
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- [ ] add more packages
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- [ ] more sensible auth
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- [ ] working precompilation; this would probably allow running this
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without a writable julia depot
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* Steps to reproduce / update the julia-to-nix part of this:
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In general, it is enough to follow the readme of julia2nix, but since
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that has a bunch of unstated assumptions and weird failure modes, here's a rough outline of how to actually do it:
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- using julia's package managing mode, make changes to ~Packages.toml~
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and ~Manifest.toml~. Be sure to use the same version of julia that
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will run on hainich (currently the ~julia_15~ package of
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nixpkgs-unstable), as otherwise hashes may be different
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- clone https://github.com/thomasjm/julia2nix somewhere
|
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- run ~julia2nix~ to generate the nix derivations
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+ unfortunately, jula2nix assumes that nixpkgs-unstable is available
|
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as ~<nixpkgs>~ from within nix; it may fail if you are on another
|
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channel. In that case, there seems to be no better solution than grepping for occurences of "<nixpkgs>" in jula2nix and replacing
|
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them with some other path that has the required version
|
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+ this will re-generate all the ~*.nix~ files in this directory, and
|
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probably reset all options. The defaults are reasonably sensible,
|
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but make sure to disable the ~precompile~ option in ~default.nix~
|
||||
(see below for why)
|
||||
- run ~nix-build --no-out-link~ to check if it worked and nix can
|
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build the julia depot
|
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- deploy hainich. Note that the derivation will only contain the
|
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package sources, not a compiled version. Julia will compile packages
|
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on startup (and cache them for subsequent runs), so after the deploy
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it may take a minute or two to actually run Pluto
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|
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* precompilation
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/In theory/, we should be able to precompile all the packages during
|
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nix-build, and then directly load them into julia and runtime.
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However, this currently fails, and even if precompiled packages are
|
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present in the depot built via nix, julia will refuse to use them and
|
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recompile them instead (in a second julia depot that is writable at
|
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runtime).
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|
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There's an open issue on this at jula2nix:
|
||||
https://github.com/thomasjm/julia2nix/issues/22
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160
pkgs/pluto/common.nix
Normal file
160
pkgs/pluto/common.nix
Normal file
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@ -0,0 +1,160 @@
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{
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callPackage,
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curl,
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fetchurl,
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git,
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stdenvNoCC,
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cacert,
|
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jq,
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julia,
|
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lib,
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python3,
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runCommand,
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stdenv,
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writeText,
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makeWrapper,
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# Arguments
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makeWrapperArgs ? "",
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precompile ? true,
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extraBuildInputs ? []
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}:
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let
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# We need to use a specially modified fetchgit that understands tree hashes, until
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# https://github.com/NixOS/nixpkgs/pull/104714 lands
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fetchgit = callPackage ./fetchgit {};
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|
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packages = callPackage ./packages.nix {};
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||||
|
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### Repoify packages
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# This step is needed because leaveDotGit is not reproducible
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# https://github.com/NixOS/nixpkgs/issues/8567
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repoified = map (item: if item.src == null then item else item // { src = repoify item.name item.treehash item.src; }) packages.closure;
|
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repoify = name: treehash: src:
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runCommand ''${name}-repoified'' {buildInputs = [git];} ''
|
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mkdir -p $out
|
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cp -r ${src}/. $out
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||||
cd $out
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||||
git init
|
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git add . -f
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||||
git config user.email "julia2nix@localhost"
|
||||
git config user.name "julia2nix"
|
||||
git commit -m "Dummy commit"
|
||||
|
||||
if [[ -n "${treehash}" ]]; then
|
||||
if [[ $(git cat-file -t ${treehash}) != "tree" ]]; then
|
||||
echo "Couldn't find desired tree object for ${name} in repoify (${treehash})"
|
||||
exit 1
|
||||
fi
|
||||
fi
|
||||
'';
|
||||
repoifiedReplaceInManifest = lib.filter (x: x.replaceUrlInManifest != null) repoified;
|
||||
|
||||
### Manifest.toml (processed)
|
||||
manifestToml = runCommand "Manifest.toml" { buildInputs = [jq]; } ''
|
||||
cp ${./Manifest.toml} ./Manifest.toml
|
||||
|
||||
echo ${writeText "packages.json" (lib.generators.toJSON {} repoifiedReplaceInManifest)}
|
||||
cat ${writeText "packages.json" (lib.generators.toJSON {} repoifiedReplaceInManifest)} | jq -r '.[]|[.name, .replaceUrlInManifest, .src] | @tsv' |
|
||||
while IFS=$'\t' read -r name replaceUrlInManifest src; do
|
||||
sed -i "s|$replaceUrlInManifest|file://$src|g" ./Manifest.toml
|
||||
done
|
||||
|
||||
cp ./Manifest.toml $out
|
||||
'';
|
||||
|
||||
### Overrides.toml
|
||||
fetchArtifact = x: stdenv.mkDerivation {
|
||||
name = x.name;
|
||||
src = fetchurl { url = x.url; sha256 = x.sha256; };
|
||||
sourceRoot = ".";
|
||||
dontConfigure = true;
|
||||
dontBuild = true;
|
||||
installPhase = "cp -r . $out";
|
||||
dontFixup = true;
|
||||
};
|
||||
artifactOverrides = lib.zipAttrsWith (name: values: fetchArtifact (lib.head (lib.head values))) (
|
||||
map (item: item.artifacts) packages.closure
|
||||
);
|
||||
overridesToml = runCommand "Overrides.toml" { buildInputs = [jq]; } ''
|
||||
echo '${lib.generators.toJSON {} artifactOverrides}' | jq -r '. | to_entries | map ((.key + " = \"" + .value + "\"")) | .[]' > $out
|
||||
'';
|
||||
|
||||
### Processed registry
|
||||
generalRegistrySrc = repoify "julia-general" "" (fetchgit {
|
||||
url = packages.registryUrl;
|
||||
rev = packages.registryRev;
|
||||
sha256 = packages.registrySha256;
|
||||
branchName = "master";
|
||||
});
|
||||
registry = runCommand "julia-registry" { buildInputs = [(python3.withPackages (ps: [ps.toml])) jq git]; } ''
|
||||
git clone ${generalRegistrySrc}/. $out
|
||||
cd $out
|
||||
|
||||
cat ${writeText "packages.json" (lib.generators.toJSON {} repoified)} | jq -r '.[]|[.name, .path, .src] | @tsv' |
|
||||
while IFS=$'\t' read -r name path src; do
|
||||
# echo "Processing: $name, $path, $src"
|
||||
if [[ "$path" != "null" ]]; then
|
||||
python -c "import toml; \
|
||||
packageTomlPath = '$path/Package.toml'; \
|
||||
contents = toml.load(packageTomlPath); \
|
||||
contents['repo'] = 'file://$src'; \
|
||||
f = open(packageTomlPath, 'w'); \
|
||||
f.write(toml.dumps(contents)); \
|
||||
"
|
||||
fi
|
||||
done
|
||||
|
||||
export HOME=$(pwd)
|
||||
git config --global user.email "julia-to-nix-depot@email.com"
|
||||
git config --global user.name "julia-to-nix-depot script"
|
||||
git add .
|
||||
git commit -m "Switch to local package repos"
|
||||
'';
|
||||
|
||||
depot = runCommand "julia-depot" {
|
||||
buildInputs = [git curl julia] ++ extraBuildInputs;
|
||||
inherit registry precompile;
|
||||
} ''
|
||||
export HOME=$(pwd)
|
||||
|
||||
echo "Using registry $registry"
|
||||
echo "Using Julia ${julia}/bin/julia"
|
||||
|
||||
cp ${manifestToml} ./Manifest.toml
|
||||
cp ${./Project.toml} ./Project.toml
|
||||
|
||||
mkdir -p $out/artifacts
|
||||
cp ${overridesToml} $out/artifacts/Overrides.toml
|
||||
|
||||
export JULIA_DEPOT_PATH=$out
|
||||
julia -e ' \
|
||||
using Pkg
|
||||
Pkg.Registry.add(RegistrySpec(path="${registry}"))
|
||||
|
||||
Pkg.activate(".")
|
||||
Pkg.instantiate()
|
||||
|
||||
# Remove the registry to save space
|
||||
Pkg.Registry.rm("General")
|
||||
'
|
||||
|
||||
if [[ -n "$precompile" ]]; then
|
||||
julia -e ' \
|
||||
using Pkg
|
||||
Pkg.activate(".")
|
||||
Pkg.precompile()
|
||||
'
|
||||
fi
|
||||
'';
|
||||
|
||||
in
|
||||
|
||||
runCommand "julia-env" {
|
||||
inherit julia depot makeWrapperArgs;
|
||||
buildInputs = [makeWrapper];
|
||||
} ''
|
||||
mkdir -p $out/bin
|
||||
makeWrapper $julia/bin/julia $out/bin/julia --suffix JULIA_DEPOT_PATH : "$depot" $makeWrapperArgs
|
||||
''
|
||||
44
pkgs/pluto/default.nix
Normal file
44
pkgs/pluto/default.nix
Normal file
|
|
@ -0,0 +1,44 @@
|
|||
{ pkgs }:
|
||||
|
||||
with pkgs;
|
||||
|
||||
|
||||
let
|
||||
# The base Julia version
|
||||
baseJulia = julia_15;
|
||||
|
||||
# Extra libraries for Julia's LD_LIBRARY_PATH.
|
||||
# Recent Julia packages that use Artifacts.toml to specify their dependencies
|
||||
# shouldn't need this.
|
||||
# But if a package implicitly depends on some library being present at runtime, you can
|
||||
# add it here.
|
||||
extraLibs = [];
|
||||
|
||||
# Wrapped Julia with libraries and environment variables.
|
||||
# Note: setting The PYTHON environment variable is recommended to prevent packages
|
||||
# from trying to obtain their own with Conda.
|
||||
julia = runCommand "julia-wrapped" { buildInputs = [makeWrapper]; } ''
|
||||
mkdir -p $out/bin
|
||||
makeWrapper ${baseJulia}/bin/julia $out/bin/julia \
|
||||
--suffix LD_LIBRARY_PATH : "${lib.makeLibraryPath extraLibs}" \
|
||||
--set PYTHON ${python3}/bin/python
|
||||
'';
|
||||
|
||||
in
|
||||
|
||||
callPackage ./common.nix {
|
||||
inherit julia;
|
||||
|
||||
# Run Pkg.precompile() to precompile all packages?
|
||||
precompile = false;
|
||||
|
||||
# Extra arguments to makeWrapper when creating the final Julia wrapper.
|
||||
# By default, it will just put the new depot at the end of JULIA_DEPOT_PATH.
|
||||
# You can add additional flags here.
|
||||
makeWrapperArgs = "";
|
||||
|
||||
# Extra buildInputs for building the Julia depot. Useful if your packages have
|
||||
# additional build-time dependencies not managed through the Artifacts.toml system.
|
||||
# Defaults to extraLibs, but can be configured independently.
|
||||
extraBuildInputs = extraLibs;
|
||||
}
|
||||
16
pkgs/pluto/fetchgit/builder.sh
Normal file
16
pkgs/pluto/fetchgit/builder.sh
Normal file
|
|
@ -0,0 +1,16 @@
|
|||
# tested so far with:
|
||||
# - no revision specified and remote has a HEAD which is used
|
||||
# - revision specified and remote has a HEAD
|
||||
# - revision specified and remote without HEAD
|
||||
source $stdenv/setup
|
||||
|
||||
header "exporting $url (rev $rev) into $out"
|
||||
|
||||
$SHELL $fetcher --builder --url "$url" --out "$out" --rev "$rev" \
|
||||
${leaveDotGit:+--leave-dotGit} \
|
||||
${deepClone:+--deepClone} \
|
||||
${fetchSubmodules:+--fetch-submodules} \
|
||||
${branchName:+--branch-name "$branchName"}
|
||||
|
||||
runHook postFetch
|
||||
stopNest
|
||||
71
pkgs/pluto/fetchgit/default.nix
Normal file
71
pkgs/pluto/fetchgit/default.nix
Normal file
|
|
@ -0,0 +1,71 @@
|
|||
{stdenvNoCC, git, cacert}: let
|
||||
urlToName = url: rev: let
|
||||
inherit (stdenvNoCC.lib) removeSuffix splitString last;
|
||||
base = last (splitString ":" (baseNameOf (removeSuffix "/" url)));
|
||||
|
||||
matched = builtins.match "(.*).git" base;
|
||||
|
||||
short = builtins.substring 0 7 rev;
|
||||
|
||||
appendShort = if (builtins.match "[a-f0-9]*" rev) != null
|
||||
then "-${short}"
|
||||
else "";
|
||||
in "${if matched == null then base else builtins.head matched}${appendShort}";
|
||||
in
|
||||
{ url, rev ? "HEAD", md5 ? "", sha256 ? "", leaveDotGit ? deepClone
|
||||
, fetchSubmodules ? true, deepClone ? false
|
||||
, branchName ? null
|
||||
, name ? urlToName url rev
|
||||
, # Shell code executed after the file has been fetched
|
||||
# successfully. This can do things like check or transform the file.
|
||||
postFetch ? ""
|
||||
, preferLocalBuild ? true
|
||||
}:
|
||||
|
||||
/* NOTE:
|
||||
fetchgit has one problem: git fetch only works for refs.
|
||||
This is because fetching arbitrary (maybe dangling) commits may be a security risk
|
||||
and checking whether a commit belongs to a ref is expensive. This may
|
||||
change in the future when some caching is added to git (?)
|
||||
Usually refs are either tags (refs/tags/*) or branches (refs/heads/*)
|
||||
Cloning branches will make the hash check fail when there is an update.
|
||||
But not all patches we want can be accessed by tags.
|
||||
|
||||
The workaround is getting the last n commits so that it's likely that they
|
||||
still contain the hash we want.
|
||||
|
||||
for now : increase depth iteratively (TODO)
|
||||
|
||||
real fix: ask git folks to add a
|
||||
git fetch $HASH contained in $BRANCH
|
||||
facility because checking that $HASH is contained in $BRANCH is less
|
||||
expensive than fetching --depth $N.
|
||||
Even if git folks implemented this feature soon it may take years until
|
||||
server admins start using the new version?
|
||||
*/
|
||||
|
||||
assert deepClone -> leaveDotGit;
|
||||
|
||||
if md5 != "" then
|
||||
throw "fetchgit does not support md5 anymore, please use sha256"
|
||||
else
|
||||
stdenvNoCC.mkDerivation {
|
||||
inherit name;
|
||||
builder = ./builder.sh;
|
||||
fetcher = ./nix-prefetch-git; # This must be a string to ensure it's called with bash.
|
||||
nativeBuildInputs = [git];
|
||||
|
||||
outputHashAlgo = "sha256";
|
||||
outputHashMode = "recursive";
|
||||
outputHash = sha256;
|
||||
|
||||
inherit url rev leaveDotGit fetchSubmodules deepClone branchName postFetch;
|
||||
|
||||
GIT_SSL_CAINFO = "${cacert}/etc/ssl/certs/ca-bundle.crt";
|
||||
|
||||
impureEnvVars = stdenvNoCC.lib.fetchers.proxyImpureEnvVars ++ [
|
||||
"GIT_PROXY_COMMAND" "SOCKS_SERVER"
|
||||
];
|
||||
|
||||
inherit preferLocalBuild;
|
||||
}
|
||||
459
pkgs/pluto/fetchgit/nix-prefetch-git
Executable file
459
pkgs/pluto/fetchgit/nix-prefetch-git
Executable file
|
|
@ -0,0 +1,459 @@
|
|||
#! /usr/bin/env bash
|
||||
|
||||
set -e -o pipefail
|
||||
|
||||
url=
|
||||
rev=
|
||||
expHash=
|
||||
hashType=$NIX_HASH_ALGO
|
||||
deepClone=$NIX_PREFETCH_GIT_DEEP_CLONE
|
||||
leaveDotGit=$NIX_PREFETCH_GIT_LEAVE_DOT_GIT
|
||||
fetchSubmodules=
|
||||
builder=
|
||||
branchName=$NIX_PREFETCH_GIT_BRANCH_NAME
|
||||
|
||||
# ENV params
|
||||
out=${out:-}
|
||||
http_proxy=${http_proxy:-}
|
||||
|
||||
# populated by clone_user_rev()
|
||||
fullRev=
|
||||
humanReadableRev=
|
||||
commitDate=
|
||||
commitDateStrict8601=
|
||||
|
||||
if test -n "$deepClone"; then
|
||||
deepClone=true
|
||||
else
|
||||
deepClone=
|
||||
fi
|
||||
|
||||
if test "$leaveDotGit" != 1; then
|
||||
leaveDotGit=
|
||||
else
|
||||
leaveDotGit=true
|
||||
fi
|
||||
|
||||
usage(){
|
||||
echo >&2 "syntax: nix-prefetch-git [options] [URL [REVISION [EXPECTED-HASH]]]
|
||||
|
||||
Options:
|
||||
--out path Path where the output would be stored.
|
||||
--url url Any url understood by 'git clone'.
|
||||
--rev ref Any sha1 or references (such as refs/heads/master)
|
||||
--hash h Expected hash.
|
||||
--branch-name Branch name to check out into
|
||||
--deepClone Clone the entire repository.
|
||||
--no-deepClone Make a shallow clone of just the required ref.
|
||||
--leave-dotGit Keep the .git directories.
|
||||
--fetch-submodules Fetch submodules.
|
||||
--builder Clone as fetchgit does, but url, rev, and out option are mandatory.
|
||||
--quiet Only print the final json summary.
|
||||
"
|
||||
exit 1
|
||||
}
|
||||
|
||||
# some git commands print to stdout, which would contaminate our JSON output
|
||||
clean_git(){
|
||||
git "$@" >&2
|
||||
}
|
||||
|
||||
argi=0
|
||||
argfun=""
|
||||
for arg; do
|
||||
if test -z "$argfun"; then
|
||||
case $arg in
|
||||
--out) argfun=set_out;;
|
||||
--url) argfun=set_url;;
|
||||
--rev) argfun=set_rev;;
|
||||
--hash) argfun=set_hashType;;
|
||||
--branch-name) argfun=set_branchName;;
|
||||
--deepClone) deepClone=true;;
|
||||
--quiet) QUIET=true;;
|
||||
--no-deepClone) deepClone=;;
|
||||
--leave-dotGit) leaveDotGit=true;;
|
||||
--fetch-submodules) fetchSubmodules=true;;
|
||||
--builder) builder=true;;
|
||||
-h|--help) usage; exit;;
|
||||
*)
|
||||
: $((++argi))
|
||||
case $argi in
|
||||
1) url=$arg;;
|
||||
2) rev=$arg;;
|
||||
3) expHash=$arg;;
|
||||
*) exit 1;;
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
else
|
||||
case $argfun in
|
||||
set_*)
|
||||
var=${argfun#set_}
|
||||
eval $var=$arg
|
||||
;;
|
||||
esac
|
||||
argfun=""
|
||||
fi
|
||||
done
|
||||
|
||||
if test -z "$url"; then
|
||||
usage
|
||||
fi
|
||||
|
||||
|
||||
init_remote(){
|
||||
local url=$1
|
||||
clean_git init
|
||||
clean_git remote add origin "$url"
|
||||
( [ -n "$http_proxy" ] && clean_git config http.proxy "$http_proxy" ) || true
|
||||
}
|
||||
|
||||
# Return the reference of an hash if it exists on the remote repository.
|
||||
ref_from_hash(){
|
||||
local hash=$1
|
||||
git ls-remote origin | sed -n "\,$hash\t, { s,\(.*\)\t\(.*\),\2,; p; q}"
|
||||
}
|
||||
|
||||
# Return the hash of a reference if it exists on the remote repository.
|
||||
hash_from_ref(){
|
||||
local ref=$1
|
||||
git ls-remote origin | sed -n "\,\t$ref, { s,\(.*\)\t\(.*\),\1,; p; q}"
|
||||
}
|
||||
|
||||
# Returns a name based on the url and reference
|
||||
#
|
||||
# This function needs to be in sync with nix's fetchgit implementation
|
||||
# of urlToName() to re-use the same nix store paths.
|
||||
url_to_name(){
|
||||
local url=$1
|
||||
local ref=$2
|
||||
local base
|
||||
base=$(basename "$url" .git | cut -d: -f2)
|
||||
|
||||
if [[ $ref =~ ^[a-z0-9]+$ ]]; then
|
||||
echo "$base-${ref:0:7}"
|
||||
else
|
||||
echo "$base"
|
||||
fi
|
||||
}
|
||||
|
||||
# Fetch everything and checkout the right sha1
|
||||
checkout_hash(){
|
||||
local hash="$1"
|
||||
local ref="$2"
|
||||
|
||||
if test -z "$hash"; then
|
||||
hash=$(hash_from_ref "$ref")
|
||||
fi
|
||||
|
||||
clean_git fetch -t ${builder:+--progress} origin || return 1
|
||||
|
||||
local object_type=$(git cat-file -t "$hash")
|
||||
if [[ "$object_type" == "commit" ]]; then
|
||||
clean_git checkout -b "$branchName" "$hash" || return 1
|
||||
elif [[ "$object_type" == "tree" ]]; then
|
||||
clean_git config user.email "nix-prefetch-git@localhost"
|
||||
clean_git config user.name "nix-prefetch-git"
|
||||
commit_id=$(git commit-tree "$hash" -m "Commit created from tree hash $hash")
|
||||
clean_git checkout -b "$branchName" "$commit_id" || return 1
|
||||
else
|
||||
echo "Unrecognized git object type: $object_type"
|
||||
return 1
|
||||
fi
|
||||
}
|
||||
|
||||
# Fetch only a branch/tag and checkout it.
|
||||
checkout_ref(){
|
||||
local hash="$1"
|
||||
local ref="$2"
|
||||
|
||||
if [[ -n "$deepClone" ]]; then
|
||||
# The caller explicitly asked for a deep clone. Deep clones
|
||||
# allow "git describe" and similar tools to work. See
|
||||
# https://marc.info/?l=nix-dev&m=139641582514772
|
||||
# for a discussion.
|
||||
return 1
|
||||
fi
|
||||
|
||||
if test -z "$ref"; then
|
||||
ref=$(ref_from_hash "$hash")
|
||||
fi
|
||||
|
||||
if test -n "$ref"; then
|
||||
# --depth option is ignored on http repository.
|
||||
clean_git fetch ${builder:+--progress} --depth 1 origin +"$ref" || return 1
|
||||
clean_git checkout -b "$branchName" FETCH_HEAD || return 1
|
||||
else
|
||||
return 1
|
||||
fi
|
||||
}
|
||||
|
||||
# Update submodules
|
||||
init_submodules(){
|
||||
# Add urls into .git/config file
|
||||
clean_git submodule init
|
||||
|
||||
# list submodule directories and their hashes
|
||||
git submodule status |
|
||||
while read -r l; do
|
||||
local hash
|
||||
local dir
|
||||
local name
|
||||
local url
|
||||
|
||||
# checkout each submodule
|
||||
hash=$(echo "$l" | awk '{print $1}' | tr -d '-')
|
||||
dir=$(echo "$l" | sed -n 's/^.[0-9a-f]\+ \(.*[^)]*\)\( (.*)\)\?$/\1/p')
|
||||
name=$(
|
||||
git config -f .gitmodules --get-regexp submodule\..*\.path |
|
||||
sed -n "s,^\(.*\)\.path $dir\$,\\1,p")
|
||||
url=$(git config --get "${name}.url")
|
||||
|
||||
clone "$dir" "$url" "$hash" ""
|
||||
done
|
||||
}
|
||||
|
||||
clone(){
|
||||
local top=$PWD
|
||||
local dir="$1"
|
||||
local url="$2"
|
||||
local hash="$3"
|
||||
local ref="$4"
|
||||
|
||||
cd "$dir"
|
||||
|
||||
# Initialize the repository.
|
||||
init_remote "$url"
|
||||
|
||||
# Download data from the repository.
|
||||
checkout_ref "$hash" "$ref" ||
|
||||
checkout_hash "$hash" "$ref" || (
|
||||
echo 1>&2 "Unable to checkout $hash$ref from $url."
|
||||
exit 1
|
||||
)
|
||||
|
||||
# Checkout linked sources.
|
||||
if test -n "$fetchSubmodules"; then
|
||||
init_submodules
|
||||
fi
|
||||
|
||||
if [ -z "$builder" ] && [ -f .topdeps ]; then
|
||||
if tg help &>/dev/null; then
|
||||
echo "populating TopGit branches..."
|
||||
tg remote --populate origin
|
||||
else
|
||||
echo "WARNING: would populate TopGit branches but TopGit is not available" >&2
|
||||
echo "WARNING: install TopGit to fix the problem" >&2
|
||||
fi
|
||||
fi
|
||||
|
||||
cd "$top"
|
||||
}
|
||||
|
||||
# Remove all remote branches, remove tags not reachable from HEAD, do a full
|
||||
# repack and then garbage collect unreferenced objects.
|
||||
make_deterministic_repo(){
|
||||
local repo="$1"
|
||||
|
||||
# run in sub-shell to not touch current working directory
|
||||
(
|
||||
cd "$repo"
|
||||
# Remove files that contain timestamps or otherwise have non-deterministic
|
||||
# properties.
|
||||
rm -rf .git/logs/ .git/hooks/ .git/index .git/FETCH_HEAD .git/ORIG_HEAD \
|
||||
.git/refs/remotes/origin/HEAD .git/config
|
||||
|
||||
# Remove all remote branches.
|
||||
git branch -r | while read -r branch; do
|
||||
clean_git branch -rD "$branch"
|
||||
done
|
||||
|
||||
# Remove tags not reachable from HEAD. If we're exactly on a tag, don't
|
||||
# delete it.
|
||||
maybe_tag=$(git tag --points-at HEAD)
|
||||
git tag --contains HEAD | while read -r tag; do
|
||||
if [ "$tag" != "$maybe_tag" ]; then
|
||||
clean_git tag -d "$tag"
|
||||
fi
|
||||
done
|
||||
|
||||
# Do a full repack. Must run single-threaded, or else we lose determinism.
|
||||
clean_git config pack.threads 1
|
||||
clean_git repack -A -d -f
|
||||
rm -f .git/config
|
||||
|
||||
# Garbage collect unreferenced objects.
|
||||
# Note: --keep-largest-pack prevents non-deterministic ordering of packs
|
||||
# listed in .git/objects/info/packs by only using a single pack
|
||||
clean_git gc --prune=all --keep-largest-pack
|
||||
)
|
||||
}
|
||||
|
||||
|
||||
clone_user_rev() {
|
||||
local dir="$1"
|
||||
local url="$2"
|
||||
local rev="${3:-HEAD}"
|
||||
|
||||
# Perform the checkout.
|
||||
case "$rev" in
|
||||
HEAD|refs/*)
|
||||
clone "$dir" "$url" "" "$rev" 1>&2;;
|
||||
*)
|
||||
if test -z "$(echo "$rev" | tr -d 0123456789abcdef)"; then
|
||||
clone "$dir" "$url" "$rev" "" 1>&2
|
||||
else
|
||||
# if revision is not hexadecimal it might be a tag
|
||||
clone "$dir" "$url" "" "refs/tags/$rev" 1>&2
|
||||
fi;;
|
||||
esac
|
||||
|
||||
pushd "$dir" >/dev/null
|
||||
fullRev=$( (git rev-parse "$rev" 2>/dev/null || git rev-parse "refs/heads/$branchName") | tail -n1)
|
||||
humanReadableRev=$(git describe "$fullRev" 2> /dev/null || git describe --tags "$fullRev" 2> /dev/null || echo -- none --)
|
||||
commitDate=$(git show -1 --no-patch --pretty=%ci "$fullRev")
|
||||
commitDateStrict8601=$(git show -1 --no-patch --pretty=%cI "$fullRev")
|
||||
popd >/dev/null
|
||||
|
||||
# Allow doing additional processing before .git removal
|
||||
eval "$NIX_PREFETCH_GIT_CHECKOUT_HOOK"
|
||||
if test -z "$leaveDotGit"; then
|
||||
echo "removing \`.git'..." >&2
|
||||
find "$dir" -name .git -print0 | xargs -0 rm -rf
|
||||
else
|
||||
find "$dir" -name .git | while read -r gitdir; do
|
||||
make_deterministic_repo "$(readlink -f "$gitdir/..")"
|
||||
done
|
||||
fi
|
||||
}
|
||||
|
||||
exit_handlers=()
|
||||
|
||||
run_exit_handlers() {
|
||||
exit_status=$?
|
||||
for handler in "${exit_handlers[@]}"; do
|
||||
eval "$handler $exit_status"
|
||||
done
|
||||
}
|
||||
|
||||
trap run_exit_handlers EXIT
|
||||
|
||||
quiet_exit_handler() {
|
||||
exec 2>&3 3>&-
|
||||
if [ $1 -ne 0 ]; then
|
||||
cat "$errfile" >&2
|
||||
fi
|
||||
rm -f "$errfile"
|
||||
}
|
||||
|
||||
quiet_mode() {
|
||||
errfile="$(mktemp "${TMPDIR:-/tmp}/git-checkout-err-XXXXXXXX")"
|
||||
exit_handlers+=(quiet_exit_handler)
|
||||
exec 3>&2 2>"$errfile"
|
||||
}
|
||||
|
||||
json_escape() {
|
||||
local s="$1"
|
||||
s="${s//\\/\\\\}" # \
|
||||
s="${s//\"/\\\"}" # "
|
||||
s="${s//^H/\\\b}" # \b (backspace)
|
||||
s="${s//^L/\\\f}" # \f (form feed)
|
||||
s="${s//
|
||||
/\\\n}" # \n (newline)
|
||||
s="${s//^M/\\\r}" # \r (carriage return)
|
||||
s="${s// /\\t}" # \t (tab)
|
||||
echo "$s"
|
||||
}
|
||||
|
||||
print_results() {
|
||||
hash="$1"
|
||||
if ! test -n "$QUIET"; then
|
||||
echo "" >&2
|
||||
echo "git revision is $fullRev" >&2
|
||||
if test -n "$finalPath"; then
|
||||
echo "path is $finalPath" >&2
|
||||
fi
|
||||
echo "git human-readable version is $humanReadableRev" >&2
|
||||
echo "Commit date is $commitDate" >&2
|
||||
if test -n "$hash"; then
|
||||
echo "hash is $hash" >&2
|
||||
fi
|
||||
fi
|
||||
if test -n "$hash"; then
|
||||
cat <<EOF
|
||||
{
|
||||
"url": "$(json_escape "$url")",
|
||||
"rev": "$(json_escape "$fullRev")",
|
||||
"date": "$(json_escape "$commitDateStrict8601")",
|
||||
"path": "$(json_escape "$finalPath")",
|
||||
"$(json_escape "$hashType")": "$(json_escape "$hash")",
|
||||
"fetchSubmodules": $([[ -n "$fetchSubmodules" ]] && echo true || echo false),
|
||||
"deepClone": $([[ -n "$deepClone" ]] && echo true || echo false),
|
||||
"leaveDotGit": $([[ -n "$leaveDotGit" ]] && echo true || echo false)
|
||||
}
|
||||
EOF
|
||||
fi
|
||||
}
|
||||
|
||||
remove_tmpPath() {
|
||||
rm -rf "$tmpPath"
|
||||
}
|
||||
|
||||
if test -n "$QUIET"; then
|
||||
quiet_mode
|
||||
fi
|
||||
|
||||
if test -z "$branchName"; then
|
||||
branchName=fetchgit
|
||||
fi
|
||||
|
||||
if test -n "$builder"; then
|
||||
test -n "$out" -a -n "$url" -a -n "$rev" || usage
|
||||
mkdir -p "$out"
|
||||
clone_user_rev "$out" "$url" "$rev"
|
||||
else
|
||||
if test -z "$hashType"; then
|
||||
hashType=sha256
|
||||
fi
|
||||
|
||||
# If the hash was given, a file with that hash may already be in the
|
||||
# store.
|
||||
if test -n "$expHash"; then
|
||||
finalPath=$(nix-store --print-fixed-path --recursive "$hashType" "$expHash" "$(url_to_name "$url" "$rev")")
|
||||
if ! nix-store --check-validity "$finalPath" 2> /dev/null; then
|
||||
finalPath=
|
||||
fi
|
||||
hash=$expHash
|
||||
fi
|
||||
|
||||
# If we don't know the hash or a path with that hash doesn't exist,
|
||||
# download the file and add it to the store.
|
||||
if test -z "$finalPath"; then
|
||||
|
||||
tmpPath="$(mktemp -d "${TMPDIR:-/tmp}/git-checkout-tmp-XXXXXXXX")"
|
||||
exit_handlers+=(remove_tmpPath)
|
||||
|
||||
tmpFile="$tmpPath/$(url_to_name "$url" "$rev")"
|
||||
mkdir -p "$tmpFile"
|
||||
|
||||
# Perform the checkout.
|
||||
clone_user_rev "$tmpFile" "$url" "$rev"
|
||||
|
||||
# Compute the hash.
|
||||
hash=$(nix-hash --type $hashType --base32 "$tmpFile")
|
||||
|
||||
# Add the downloaded file to the Nix store.
|
||||
finalPath=$(nix-store --add-fixed --recursive "$hashType" "$tmpFile")
|
||||
|
||||
if test -n "$expHash" -a "$expHash" != "$hash"; then
|
||||
echo "hash mismatch for URL \`$url'. Got \`$hash'; expected \`$expHash'." >&2
|
||||
exit 1
|
||||
fi
|
||||
fi
|
||||
|
||||
print_results "$hash"
|
||||
|
||||
if test -n "$PRINT_PATH"; then
|
||||
echo "$finalPath"
|
||||
fi
|
||||
fi
|
||||
350
pkgs/pluto/packages.nix
Normal file
350
pkgs/pluto/packages.nix
Normal file
|
|
@ -0,0 +1,350 @@
|
|||
# This file is autogenerated, do not edit by hand!
|
||||
{fetchgit}: {
|
||||
registryUrl = "https://github.com/JuliaRegistries/General.git";
|
||||
registryRev = "c67828a86f7501f4d487607ded065dbff37ee456";
|
||||
registrySha256 = "1jsg9wf6gwfaswld0d6mm9g8i4v2nrd7265a2an9xh3zdk1blcny";
|
||||
rootPackages = ["Pluto"];
|
||||
closure = [{
|
||||
name = "Artifacts";
|
||||
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33";
|
||||
path = "A/Artifacts";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "c30985d8821e0cd73870b17b0ed0ce6dc44cb744";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaPackaging/Artifacts.jl.git"; rev = "c30985d8821e0cd73870b17b0ed0ce6dc44cb744"; sha256 = "0i0s26ypiwg6zyb3aqn9kiyiblkkab1mfac9plmq2jv4hggm4jfc"; };
|
||||
} {
|
||||
name = "Base64";
|
||||
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "Configurations";
|
||||
uuid = "5218b696-f38b-4ac9-8b61-a12ec717816d";
|
||||
path = "C/Configurations";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "b8486a417456d2fbbe2af13e24cef459c9f42429";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/Roger-luo/Configurations.jl.git"; rev = "b8486a417456d2fbbe2af13e24cef459c9f42429"; sha256 = "1dz1h64nqgcv6ai70pfv2dv4mqx9rqmh08196k7j73bqlc6r00w1"; };
|
||||
} {
|
||||
name = "Crayons";
|
||||
uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f";
|
||||
path = "C/Crayons";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "3f71217b538d7aaee0b69ab47d9b7724ca8afa0d";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/KristofferC/Crayons.jl.git"; rev = "3f71217b538d7aaee0b69ab47d9b7724ca8afa0d"; sha256 = "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z"; };
|
||||
} {
|
||||
name = "DataAPI";
|
||||
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a";
|
||||
path = "D/DataAPI";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "dfb3b7e89e395be1e25c2ad6d7690dc29cc53b1d";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaData/DataAPI.jl.git"; rev = "dfb3b7e89e395be1e25c2ad6d7690dc29cc53b1d"; sha256 = "14sfvkz169zcbap3gdwpj16qsap783h86fd07flfxk822abam11w"; };
|
||||
} {
|
||||
name = "DataValueInterfaces";
|
||||
uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464";
|
||||
path = "D/DataValueInterfaces";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/queryverse/DataValueInterfaces.jl.git"; rev = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"; sha256 = "0g2wj6q7jj956nx6g7dk8x7w1c4l2xcmnr1kq5x8s8fild9kslg8"; };
|
||||
} {
|
||||
name = "Dates";
|
||||
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "Distributed";
|
||||
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "ExproniconLite";
|
||||
uuid = "55351af7-c7e9-48d6-89ff-24e801d99491";
|
||||
path = "E/ExproniconLite";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "c97ce5069033ac15093dc44222e3ecb0d3af8966";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/Roger-luo/ExproniconLite.jl.git"; rev = "c97ce5069033ac15093dc44222e3ecb0d3af8966"; sha256 = "0qk73k71c6v0vsq705mmxfj4vg3qslppxy5c8magaf7v5yr605iv"; };
|
||||
} {
|
||||
name = "FuzzyCompletions";
|
||||
uuid = "fb4132e2-a121-4a70-b8a1-d5b831dcdcc2";
|
||||
path = "F/FuzzyCompletions";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "9cde086faa37f32794be3d2df393ff064d43cd66";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JunoLab/FuzzyCompletions.jl.git"; rev = "9cde086faa37f32794be3d2df393ff064d43cd66"; sha256 = "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06"; };
|
||||
} {
|
||||
name = "HTTP";
|
||||
uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3";
|
||||
path = "H/HTTP";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "b855bf8247d6e946c75bb30f593bfe7fe591058d";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaWeb/HTTP.jl.git"; rev = "b855bf8247d6e946c75bb30f593bfe7fe591058d"; sha256 = "10m7sqzm06c6pkn885gf6bjnbx4m8hcgy8lyzv15arlssrdracad"; };
|
||||
} {
|
||||
name = "IniFile";
|
||||
uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f";
|
||||
path = "I/IniFile";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "098e4d2c533924c921f9f9847274f2ad89e018b8";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaIO/IniFile.jl.git"; rev = "098e4d2c533924c921f9f9847274f2ad89e018b8"; sha256 = "19cn41w04hikrqdzlxhrgf21rfqhkvj9x1zvwh3yz9hqbf350xs9"; };
|
||||
} {
|
||||
name = "InteractiveUtils";
|
||||
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "IteratorInterfaceExtensions";
|
||||
uuid = "82899510-4779-5014-852e-03e436cf321d";
|
||||
path = "I/IteratorInterfaceExtensions";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/queryverse/IteratorInterfaceExtensions.jl.git"; rev = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"; sha256 = "1slpay1dhja8f9gy6z7b3psgvgcknn963dvfqqakvg1grk9ppa09"; };
|
||||
} {
|
||||
name = "JLLWrappers";
|
||||
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210";
|
||||
path = "J/JLLWrappers";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "642a199af8b68253517b80bd3bfd17eb4e84df6e";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaPackaging/JLLWrappers.jl.git"; rev = "642a199af8b68253517b80bd3bfd17eb4e84df6e"; sha256 = "0v7xhsv9z16d657yp47vgc86ggc01i1wigqh3n0d7i1s84z7xa0h"; };
|
||||
} {
|
||||
name = "LibGit2";
|
||||
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "Libdl";
|
||||
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "LinearAlgebra";
|
||||
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "Logging";
|
||||
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "Markdown";
|
||||
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "MbedTLS";
|
||||
uuid = "739be429-bea8-5141-9913-cc70e7f3736d";
|
||||
path = "M/MbedTLS";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "1c38e51c3d08ef2278062ebceade0e46cefc96fe";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaLang/MbedTLS.jl.git"; rev = "1c38e51c3d08ef2278062ebceade0e46cefc96fe"; sha256 = "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"; };
|
||||
} {
|
||||
name = "MbedTLS_jll";
|
||||
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1";
|
||||
path = "M/MbedTLS_jll";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "0eef589dd1c26a3ac9d753fe1a8bcad63f956fa6";
|
||||
artifacts = {
|
||||
"519367e9365948074c1fcc9f4365597f147a5ab7" = [{
|
||||
name = "MbedTLS";
|
||||
url = "https://github.com/JuliaBinaryWrappers/MbedTLS_jll.jl/releases/download/MbedTLS-v2.16.8+0/MbedTLS.v2.16.8.x86_64-linux-gnu.tar.gz";
|
||||
sha256 = "5968d98ac1d4fdbf44ed87b0687f916f69ab077961b3cc9ea6068e2d739bd953";
|
||||
}];
|
||||
};
|
||||
src = fetchgit { url = "https://github.com/JuliaBinaryWrappers/MbedTLS_jll.jl.git"; rev = "0eef589dd1c26a3ac9d753fe1a8bcad63f956fa6"; sha256 = "0x43cp26p4w799i1cy4j72l5b1dyqcsab98qjw6yydxk2wha5vw4"; };
|
||||
} {
|
||||
name = "MsgPack";
|
||||
uuid = "99f44e22-a591-53d1-9472-aa23ef4bd671";
|
||||
path = "M/MsgPack";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "a8cbf066b54d793b9a48c5daa5d586cf2b5bd43d";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaIO/MsgPack.jl.git"; rev = "a8cbf066b54d793b9a48c5daa5d586cf2b5bd43d"; sha256 = "1layiqjf9si38pfdcszppgcy4zbfqgld7jlw8x645sm9b17b19fg"; };
|
||||
} {
|
||||
name = "NetworkOptions";
|
||||
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908";
|
||||
path = "N/NetworkOptions";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "ed3157f48a05543cce9b241e1f2815f7e843d96e";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaLang/NetworkOptions.jl.git"; rev = "ed3157f48a05543cce9b241e1f2815f7e843d96e"; sha256 = "02nm4v67lb1dzhgyyr9bg8kylyyhsgfsxf3nxhbl4hp9dz48an0a"; };
|
||||
} {
|
||||
name = "OrderedCollections";
|
||||
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d";
|
||||
path = "O/OrderedCollections";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaCollections/OrderedCollections.jl.git"; rev = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c"; sha256 = "0jaxcmvkp8zpqrz101yikdigz90s70i7in5wn8kybwzf0na3lhwf"; };
|
||||
} {
|
||||
name = "Pkg";
|
||||
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "Pluto";
|
||||
uuid = "c3e4b0f8-55cb-11ea-2926-15256bba5781";
|
||||
path = "P/Pluto";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "85156b21dee3a4515ff479555eb958ad33c057aa";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/fonsp/Pluto.jl.git"; rev = "85156b21dee3a4515ff479555eb958ad33c057aa"; sha256 = "1dvgrj0likniafs06hrwfndbshqr5khdqdyylganc1m81652rz5x"; };
|
||||
} {
|
||||
name = "Preferences";
|
||||
uuid = "21216c6a-2e73-6563-6e65-726566657250";
|
||||
path = "P/Preferences";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "00cfd92944ca9c760982747e9a1d0d5d86ab1e5a";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaPackaging/Preferences.jl.git"; rev = "00cfd92944ca9c760982747e9a1d0d5d86ab1e5a"; sha256 = "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq"; };
|
||||
} {
|
||||
name = "Printf";
|
||||
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "REPL";
|
||||
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "Random";
|
||||
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "SHA";
|
||||
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce";
|
||||
path = "S/SHA";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "Serialization";
|
||||
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "Sockets";
|
||||
uuid = "6462fe0b-24de-5631-8697-dd941f90decc";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "TOML";
|
||||
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76";
|
||||
path = "T/TOML";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "44aaac2d2aec4a850302f9aa69127c74f0c3787e";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaLang/TOML.jl.git"; rev = "44aaac2d2aec4a850302f9aa69127c74f0c3787e"; sha256 = "1xy19fc5lrj9kh298xhczvmjl1cx3p46fj2xlmkisaqxzhd782yd"; };
|
||||
} {
|
||||
name = "TableIOInterface";
|
||||
uuid = "d1efa939-5518-4425-949f-ab857e148477";
|
||||
path = "T/TableIOInterface";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "9a0d3ab8afd14f33a35af7391491ff3104401a35";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/lungben/TableIOInterface.jl.git"; rev = "9a0d3ab8afd14f33a35af7391491ff3104401a35"; sha256 = "0p2fi9jbyfg2j6rysv4if7dx8qw2mssb04i75j1zq607j8707kvn"; };
|
||||
} {
|
||||
name = "TableTraits";
|
||||
uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c";
|
||||
path = "T/TableTraits";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "c06b2f539df1c6efa794486abfb6ed2022561a39";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/queryverse/TableTraits.jl.git"; rev = "c06b2f539df1c6efa794486abfb6ed2022561a39"; sha256 = "08ssb2630wm6j8f2qa985mn2vfibfm5kjcn4ayl2qkhfcyp8daw4"; };
|
||||
} {
|
||||
name = "Tables";
|
||||
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c";
|
||||
path = "T/Tables";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "c9d2d262e9a327be1f35844df25fe4561d258dc9";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaData/Tables.jl.git"; rev = "c9d2d262e9a327be1f35844df25fe4561d258dc9"; sha256 = "1q0wh4031zdp40k44jaix19pzy6cnwsa2p0zfz6799jbyqkg4kr1"; };
|
||||
} {
|
||||
name = "Test";
|
||||
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "URIs";
|
||||
uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4";
|
||||
path = "U/URIs";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "97bbe755a53fe859669cd907f2d96aee8d2c1355";
|
||||
artifacts = {};
|
||||
src = fetchgit { url = "https://github.com/JuliaWeb/URIs.jl.git"; rev = "97bbe755a53fe859669cd907f2d96aee8d2c1355"; sha256 = "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92"; };
|
||||
} {
|
||||
name = "UUIDs";
|
||||
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
} {
|
||||
name = "Unicode";
|
||||
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5";
|
||||
path = "null";
|
||||
replaceUrlInManifest = null;
|
||||
treehash = "None";
|
||||
artifacts = {};
|
||||
src = null;
|
||||
}];
|
||||
}
|
||||
15
pkgs/pluto/pluto-standalone.jl
Normal file
15
pkgs/pluto/pluto-standalone.jl
Normal file
|
|
@ -0,0 +1,15 @@
|
|||
|
||||
using Pkg
|
||||
|
||||
Pkg.activate(".")
|
||||
|
||||
using Pluto
|
||||
|
||||
Pluto.run(
|
||||
launch_browser = false,
|
||||
require_secret_for_access = false,
|
||||
require_secret_for_open_links = false,
|
||||
port = 9999,
|
||||
host = "127.0.0.1",
|
||||
notebook_path_suggestion = "/notebooks"
|
||||
)
|
||||
65
services/pluto.nix
Normal file
65
services/pluto.nix
Normal file
|
|
@ -0,0 +1,65 @@
|
|||
{ config, lib, pkgs, ... }:
|
||||
|
||||
let sources = import ../../../nix/sources.nix;
|
||||
in
|
||||
{
|
||||
containers.pluto = {
|
||||
autoStart = true;
|
||||
|
||||
bindMounts."/notebooks" = {
|
||||
hostPath = "/data/pluto";
|
||||
isReadOnly = false;
|
||||
};
|
||||
|
||||
config = {pkgs, config, ...}: {
|
||||
systemd.services.pluto =
|
||||
let
|
||||
julia = (import ../../../pkgs/pluto)
|
||||
{pkgs = import sources.nixpkgs-unstable {};};
|
||||
pluto = pkgs.stdenv.mkDerivation {
|
||||
name = "pluto-standalone";
|
||||
buildPhase = "mkdir $out";
|
||||
installPhase = ''
|
||||
cp *.toml $out
|
||||
cp *.jl $out
|
||||
'';
|
||||
src = ../../../pkgs/pluto;
|
||||
};
|
||||
in {
|
||||
enable = true;
|
||||
description = "Pluto.js notebook server";
|
||||
wantedBy = [ "multi-user.target" ];
|
||||
serviceConfig = {
|
||||
type = "simple";
|
||||
User = "pluto";
|
||||
Group = "pluto";
|
||||
};
|
||||
# julia needs some writable directory to keep state in
|
||||
# (especially precompiled artifacts). The wrapped version
|
||||
# of julia below will append this with a path from the
|
||||
# nix store that contains all needed packages, so this
|
||||
# should even work entirely without internet access.
|
||||
environment.JULIA_DEPOT_PATH = "/var/lib/julia";
|
||||
script = ''
|
||||
cd ${pluto.outPath}
|
||||
${julia}/bin/julia pluto-standalone.jl
|
||||
'';
|
||||
};
|
||||
users.users.pluto = {
|
||||
group = "pluto";
|
||||
home = "/notebooks";
|
||||
};
|
||||
users.groups.pluto = {};
|
||||
systemd.tmpfiles.rules = [
|
||||
"d /var/lib/julia 0750 pluto pluto"
|
||||
];
|
||||
};
|
||||
|
||||
};
|
||||
|
||||
systemd.services."container@pluto".serviceConfig = {
|
||||
MemoryHigh = "2G"; # will throttle, but not a hard limit
|
||||
MemoryMax = "2.5G"; # hard limit
|
||||
CPUQuota = "100%"; # give CPU time roughly equivalent to one core
|
||||
};
|
||||
}
|
||||
Loading…
Reference in a new issue